3D MKV MVC is nice but not widely supported. AVCHD 3D is supported on latest line of TV/BD player. Is there a way to remux H264 MVC in MKV to AVCHD 3D MTS?
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ffmpeg -i infile.mkv -c copy -bsf h264_mp4toannexb outfile.mts
If you want to try .mp4 with AAC audio, one of these might work
ffmpeg -i infile.mkv -c:v copy outfile.mp4
ffmpeg -i infile.mkv -c:v copy -bsf h264_mp4toannexb outfile.mp4
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I cannot confirm if this works or not. I ran it and it did generate a .mts file but my TV which claims it supports AVCHD 3D cannot play the file. – Henry Jul 09 '13 at 20:14
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would MVC stream in .mp4 work? I haven't tried – Henry Jul 09 '13 at 22:20
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I'm not sure if .mp4 will work with DTS audio – Henry Jul 09 '13 at 22:30